For a given assembly, if you want to download the FASTA sequences for a bunch of chromosomes, you can do that by going to the Genomes FTP path highlighted in the screenshot: Once you are in the Genomes FTP path, you can navigate to the FASTA folder as follows: Theobroma FTP directory Assembly Structure Primary Assembly Assembled.
File TypeFASTA Sequence File
What is a FASTA file?
Scientific data format used to store nucleic acid sequences (such as DNA sequences) or protein sequences; may contain multiple sequences and therefore is sometimes referred to as the FASTA database format; can be viewed and analyzed using DNA analysis software.
FASTA files often start with a header line that may contain comments or other information. The rest of the file contains sequence data. Each sequence starts with a '>' symbol followed by the name of the sequence. The rest of the line describes the sequence and the remaining lines contain the sequence itself.